J5_8WIC_006

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

8WIC|1|A|A|1975, 8WIC|1|A|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WIC_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.0933

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8WIC|1|A|G|1892
8WIC|1|A|C|1893
8WIC|1|A|A|1894
8WIC|1|A|A|1895
8WIC|1|A|A|1896
8WIC|1|A|A|1897
8WIC|1|A|U|1898
8WIC|1|A|G|1899
8WIC|1|A|C|1900
*
8WIC|1|A|G|1924
8WIC|1|A|A|1925
*
8WIC|1|A|U|1968
8WIC|1|A|G|1969
*
8WIC|1|A|C|1973
8WIC|1|A|A|1974
8WIC|1|A|A|1975
8WIC|1|A|A|1976
8WIC|1|A|C|1977
8WIC|1|A|C|1978
8WIC|1|A|A|1979
8WIC|1|A|G|1980
8WIC|1|A|U|1981
*
8WIC|1|A|A|2212
8WIC|1|A|A|2213
8WIC|1|A|C|2214

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain N

50S ribosomal protein L14

Chain S

50S ribosomal protein L19