J5_8WID_003

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8WID|1|a|A|105, 8WID|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WID_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0984

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8WID|1|a|C|62
8WID|1|a|A|63
8WID|1|a|A|64
8WID|1|a|G|65
*
8WID|1|a|C|102
8WID|1|a|G|103
8WID|1|a|A|104
8WID|1|a|A|105
8WID|1|a|C|106
8WID|1|a|G|107
8WID|1|a|G|108
8WID|1|a|G|109
*
8WID|1|a|C|314
8WID|1|a|A|315
8WID|1|a|C|316
*
8WID|1|a|G|337
8WID|1|a|A|338
8WID|1|a|C|339
*
8WID|1|a|G|350
8WID|1|a|G|351
8WID|1|a|C|352
8WID|1|a|A|353
8WID|1|a|G|354

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20