J5_8WIF_003

3D structure

PDB id

8WIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGAACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

8WIF|1|a|A|105, 8WIF|1|a|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8WIF_003 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.092

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WIF|1|a|C|62
8WIF|1|a|A|63
8WIF|1|a|A|64
8WIF|1|a|G|65
*
8WIF|1|a|C|102
8WIF|1|a|G|103
8WIF|1|a|A|104
8WIF|1|a|A|105
8WIF|1|a|C|106
8WIF|1|a|G|107
8WIF|1|a|G|108
8WIF|1|a|G|109
*
8WIF|1|a|C|314
8WIF|1|a|A|315
8WIF|1|a|C|316
*
8WIF|1|a|G|337
8WIF|1|a|A|338
8WIF|1|a|C|339
*
8WIF|1|a|G|350
8WIF|1|a|G|351
8WIF|1|a|C|352
8WIF|1|a|A|353
8WIF|1|a|G|354

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20