Loop J5_8WV1

3D structure

PDB id: 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
Experimental method: X-RAY DIFFRACTION
Resolution: 3.99 Å

Loop

Sequence: CGAGC*GGAACC*GAGGAGAGGAAAGAGAAAUCGACU*ACCAGC*GCUAAGUACUCCG
Length: 54 nucleotides
Bulged bases: 8WV1|1|A|A|212, 8WV1|1|A|A|218
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8WV1|1|A|C|41
8WV1|1|A|G|42
8WV1|1|A|A|43
8WV1|1|A|G|44
8WV1|1|A|C|45
*
8WV1|1|A|G|168
8WV1|1|A|G|169
8WV1|1|A|A|170
8WV1|1|A|A|171
8WV1|1|A|C|172
8WV1|1|A|C|173
*
8WV1|1|A|G|201
8WV1|1|A|A|202
8WV1|1|A|G|203
8WV1|1|A|G|204
8WV1|1|A|A|205
8WV1|1|A|G|206
8WV1|1|A|A|207
8WV1|1|A|G|208
8WV1|1|A|G|209
8WV1|1|A|A|210
8WV1|1|A|A|211
8WV1|1|A|A|212
8WV1|1|A|G|213
8WV1|1|A|A|214
8WV1|1|A|G|215
8WV1|1|A|A|216
8WV1|1|A|A|217
8WV1|1|A|A|218
8WV1|1|A|U|219
8WV1|1|A|C|220
8WV1|1|A|G|221
8WV1|1|A|A|222
8WV1|1|A|C|223
8WV1|1|A|U|224
*
8WV1|1|A|A|251
8WV1|1|A|C|252
8WV1|1|A|C|253
8WV1|1|A|A|254
8WV1|1|A|G|255
8WV1|1|A|C|256
*
8WV1|1|A|G|452
8WV1|1|A|C|453
8WV1|1|A|U|454
8WV1|1|A|A|455
8WV1|1|A|A|456
8WV1|1|A|G|457
8WV1|1|A|U|458
8WV1|1|A|A|459
8WV1|1|A|C|460
8WV1|1|A|U|461
8WV1|1|A|C|462
8WV1|1|A|C|463
8WV1|1|A|G|464

Current chains

Chain A: 23S rRNA

Nearby chains

Chain 2: 50S ribosomal protein L34
Chain E: 50S ribosomal protein L4
Chain K: 50S ribosomal protein L15
Chain W: Large ribosomal subunit protein bL28

J5_8WV1_001