J5_8WV1_017
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- AAAAGACC*GGAUAACAG*CCUCG(2MA)UGUC*GGUUCAG*CGGUCU
- Length
- 40 nucleotides
- Bulged bases
- 8WV1|1|a|A|2084, 8WV1|1|a|A|2460, 8WV1|1|a|U|2461, 8WV1|1|a|G|2517, 8WV1|1|a|U|2518, 8WV1|1|a|U|2621, 8WV1|1|a|C|2622
- QA status
- Modified nucleotides: 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8WV1|1|a|A|2079
8WV1|1|a|A|2080
8WV1|1|a|A|2081
8WV1|1|a|A|2082
8WV1|1|a|G|2083
8WV1|1|a|A|2084
8WV1|1|a|C|2085
8WV1|1|a|C|2086
*
8WV1|1|a|G|2458
8WV1|1|a|G|2459
8WV1|1|a|A|2460
8WV1|1|a|U|2461
8WV1|1|a|A|2462
8WV1|1|a|A|2463
8WV1|1|a|C|2464
8WV1|1|a|A|2465
8WV1|1|a|G|2466
*
8WV1|1|a|C|2510
8WV1|1|a|C|2511
8WV1|1|a|U|2512
8WV1|1|a|C|2513
8WV1|1|a|G|2514
8WV1|1|a|2MA|2515
8WV1|1|a|U|2516
8WV1|1|a|G|2517
8WV1|1|a|U|2518
8WV1|1|a|C|2519
*
8WV1|1|a|G|2594
8WV1|1|a|G|2595
8WV1|1|a|U|2596
8WV1|1|a|U|2597
8WV1|1|a|C|2598
8WV1|1|a|A|2599
8WV1|1|a|G|2600
*
8WV1|1|a|C|2618
8WV1|1|a|G|2619
8WV1|1|a|G|2620
8WV1|1|a|U|2621
8WV1|1|a|C|2622
8WV1|1|a|U|2623
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L2
- Chain d
- 50S ribosomal protein L3
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain l
- 50S ribosomal protein L16
- Chain r
- 50S ribosomal protein L22
Coloring options: