J5_8WV1_018
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GUGGAGCUUUA*UUUG*CG*CG*CGGAUAAAAGUUACCCC
- Length
- 36 nucleotides
- Bulged bases
- 8WV1|1|a|U|2098, 8WV1|1|a|G|2440, 8WV1|1|a|G|2441, 8WV1|1|a|U|2443, 8WV1|1|a|A|2451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8WV1|1|a|G|2089
8WV1|1|a|U|2090
8WV1|1|a|G|2091
8WV1|1|a|G|2092
8WV1|1|a|A|2093
8WV1|1|a|G|2094
8WV1|1|a|C|2095
8WV1|1|a|U|2096
8WV1|1|a|U|2097
8WV1|1|a|U|2098
8WV1|1|a|A|2099
*
8WV1|1|a|U|2255
8WV1|1|a|U|2256
8WV1|1|a|U|2257
8WV1|1|a|G|2258
*
8WV1|1|a|C|2270
8WV1|1|a|G|2271
*
8WV1|1|a|C|2293
8WV1|1|a|G|2294
*
8WV1|1|a|C|2439
8WV1|1|a|G|2440
8WV1|1|a|G|2441
8WV1|1|a|A|2442
8WV1|1|a|U|2443
8WV1|1|a|A|2444
8WV1|1|a|A|2445
8WV1|1|a|A|2446
8WV1|1|a|A|2447
8WV1|1|a|G|2448
8WV1|1|a|U|2449
8WV1|1|a|U|2450
8WV1|1|a|A|2451
8WV1|1|a|C|2452
8WV1|1|a|C|2453
8WV1|1|a|C|2454
8WV1|1|a|C|2455
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33
- Chain 8
- 50S ribosomal protein L35
- Chain c
- 50S ribosomal protein L2
- Chain e
- 50S ribosomal protein L4
- Chain k
- 50S ribosomal protein L15
- Chain v
- Large ribosomal subunit protein bL27
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: