J5_8WV1_020

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GCCCAAAG*CUGAC*GGG*CGGGCCUAGUGAACC*GAUCAAC

Length

38 nucleotides

Bulged bases

8WV1|1|a|A|2300, 8WV1|1|a|G|2394, 8WV1|1|a|U|2402, 8WV1|1|a|A|2438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|a|G|2294
8WV1|1|a|C|2295
8WV1|1|a|C|2296
8WV1|1|a|C|2297
8WV1|1|a|A|2298
8WV1|1|a|A|2299
8WV1|1|a|A|2300
8WV1|1|a|G|2301
*
8WV1|1|a|C|2355
8WV1|1|a|U|2356
8WV1|1|a|G|2357
8WV1|1|a|A|2358
8WV1|1|a|C|2359
*
8WV1|1|a|G|2382
8WV1|1|a|G|2383
8WV1|1|a|G|2384
*
8WV1|1|a|C|2393
8WV1|1|a|G|2394
8WV1|1|a|G|2395
8WV1|1|a|G|2396
8WV1|1|a|C|2397
8WV1|1|a|C|2398
8WV1|1|a|U|2399
8WV1|1|a|A|2400
8WV1|1|a|G|2401
8WV1|1|a|U|2402
8WV1|1|a|G|2403
8WV1|1|a|A|2404
8WV1|1|a|A|2405
8WV1|1|a|C|2406
8WV1|1|a|C|2407
*
8WV1|1|a|G|2433
8WV1|1|a|A|2434
8WV1|1|a|U|2435
8WV1|1|a|C|2436
8WV1|1|a|A|2437
8WV1|1|a|A|2438
8WV1|1|a|C|2439

Current chains

Chain a

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L33

Chain 8

50S ribosomal protein L35

Chain k

50S ribosomal protein L15

Chain n

50S ribosomal protein L18

Chain v

Large ribosomal subunit protein bL27

Chain w

Large ribosomal subunit protein bL28