J5_8WV1_028

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CAAGGGUUC*GGUUAG*CU*ACCCGUACCGCAAAC*GUG

Length

35 nucleotides

Bulged bases

8WV1|1|a|U|1387, 8WV1|1|a|C|1653, 8WV1|1|a|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|a|C|1352
8WV1|1|a|A|1353
8WV1|1|a|A|1354
8WV1|1|a|G|1355
8WV1|1|a|G|1356
8WV1|1|a|G|1357
8WV1|1|a|U|1358
8WV1|1|a|U|1359
8WV1|1|a|C|1360
*
8WV1|1|a|G|1384
8WV1|1|a|G|1385
8WV1|1|a|U|1386
8WV1|1|a|U|1387
8WV1|1|a|A|1388
8WV1|1|a|G|1389
*
8WV1|1|a|C|1450
8WV1|1|a|U|1451
*
8WV1|1|a|A|1643
8WV1|1|a|C|1644
8WV1|1|a|C|1645
8WV1|1|a|C|1646
8WV1|1|a|G|1647
8WV1|1|a|U|1648
8WV1|1|a|A|1649
8WV1|1|a|C|1650
8WV1|1|a|C|1651
8WV1|1|a|G|1652
8WV1|1|a|C|1653
8WV1|1|a|A|1654
8WV1|1|a|A|1655
8WV1|1|a|A|1656
8WV1|1|a|C|1657
*
8WV1|1|a|G|1666
8WV1|1|a|U|1667
8WV1|1|a|G|1668

Current chains

Chain a

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain s

50S ribosomal protein L23

Chain x

Large ribosomal subunit protein uL29