J5_8WV1_030

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

ACUCUGCAAGUUGG*UGC*GCC*GUGAACAGG*CGCUGU

Length

35 nucleotides

Bulged bases

8WV1|1|a|G|1789, 8WV1|1|a|G|1794, 8WV1|1|a|G|2014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|a|A|1716
8WV1|1|a|C|1717
8WV1|1|a|U|1718
8WV1|1|a|C|1719
8WV1|1|a|U|1720
8WV1|1|a|G|1721
8WV1|1|a|C|1722
8WV1|1|a|A|1723
8WV1|1|a|A|1724
8WV1|1|a|G|1725
8WV1|1|a|U|1726
8WV1|1|a|U|1727
8WV1|1|a|G|1728
8WV1|1|a|G|1729
*
8WV1|1|a|U|1753
8WV1|1|a|G|1754
8WV1|1|a|C|1755
*
8WV1|1|a|G|1781
8WV1|1|a|C|1782
8WV1|1|a|C|1783
*
8WV1|1|a|G|1787
8WV1|1|a|U|1788
8WV1|1|a|G|1789
8WV1|1|a|A|1790
8WV1|1|a|A|1791
8WV1|1|a|C|1792
8WV1|1|a|A|1793
8WV1|1|a|G|1794
8WV1|1|a|G|1795
*
8WV1|1|a|C|2010
8WV1|1|a|G|2011
8WV1|1|a|C|2012
8WV1|1|a|U|2013
8WV1|1|a|G|2014
8WV1|1|a|U|2015

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain j

Large ribosomal subunit protein uL14

Chain o

50S ribosomal protein L19