J5_8XU8_011
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8XU8|1|A|G|2418, 8XU8|1|A|A|2799, 8XU8|1|A|G|2800, 8XU8|1|A|A|2801, 8XU8|1|A|A|2802, 8XU8|1|A|A|2803
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8XU8_011 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.1143
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8XU8|1|A|U|2416
8XU8|1|A|U|2417
8XU8|1|A|G|2418
8XU8|1|A|A|2419
*
8XU8|1|A|U|2611
8XU8|1|A|U|2612
8XU8|1|A|U|2613
8XU8|1|A|G|2614
*
8XU8|1|A|C|2627
8XU8|1|A|A|2628
*
8XU8|1|A|U|2650
8XU8|1|A|G|2651
*
8XU8|1|A|C|2798
8XU8|1|A|A|2799
8XU8|1|A|G|2800
8XU8|1|A|A|2801
8XU8|1|A|A|2802
8XU8|1|A|A|2803
8XU8|1|A|A|2804
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain S
- Large ribosomal subunit protein eL18A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain c
- Large ribosomal subunit protein uL15
- Chain d
- Large ribosomal subunit protein eL29
- Chain q
- Large ribosomal subunit protein eL42A
- Chain t
- Transfer RNA; tRNA
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