J5_8XXL_002
3D structure
- PDB id
- 8XXL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 40S ribosome with PDCD4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8XXL|1|S2|A|92, 8XXL|1|S2|C|472
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8XXL_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.053
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8XXL|1|S2|C|53
8XXL|1|S2|A|54
8XXL|1|S2|U|55
8XXL|1|S2|G|56
*
8XXL|1|S2|C|89
8XXL|1|S2|G|90
8XXL|1|S2|A|91
8XXL|1|S2|A|92
8XXL|1|S2|U|93
8XXL|1|S2|G|94
8XXL|1|S2|G|95
8XXL|1|S2|C|96
*
8XXL|1|S2|G|434
8XXL|1|S2|A|435
8XXL|1|S2|G|436
*
8XXL|1|S2|C|457
8XXL|1|S2|A|458
8XXL|1|S2|C|459
*
8XXL|1|S2|G|470
8XXL|1|S2|G|471
8XXL|1|S2|C|472
8XXL|1|S2|A|473
8XXL|1|S2|G|474
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: