3D structure

PDB id
8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
Description
dormant ribosome with STM1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.59 Å

Loop

Sequence
CAUG*CGAAUGGC*GAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
8Y0U|1|C2|A|93, 8Y0U|1|C2|C|424
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8Y0U_009 not in the Motif Atlas
Homologous match to J5_8C3A_020
Geometric discrepancy: 0.107
The information below is about J5_8C3A_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.4
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8Y0U|1|C2|C|54
8Y0U|1|C2|A|55
8Y0U|1|C2|U|56
8Y0U|1|C2|G|57
*
8Y0U|1|C2|C|90
8Y0U|1|C2|G|91
8Y0U|1|C2|A|92
8Y0U|1|C2|A|93
8Y0U|1|C2|U|94
8Y0U|1|C2|G|95
8Y0U|1|C2|G|96
8Y0U|1|C2|C|97
*
8Y0U|1|C2|G|386
8Y0U|1|C2|A|387
8Y0U|1|C2|G|388
*
8Y0U|1|C2|C|409
8Y0U|1|C2|A|410
8Y0U|1|C2|C|411
*
8Y0U|1|C2|G|422
8Y0U|1|C2|G|423
8Y0U|1|C2|C|424
8Y0U|1|C2|A|425
8Y0U|1|C2|G|426

Current chains

Chain C2
18S rRNA

Nearby chains

Chain LV
Large ribosomal subunit protein uL14A
Chain SE
40S ribosomal protein S4-A
Chain SG
40S ribosomal protein S6-A
Chain SI
40S ribosomal protein S8-A
Chain SJ
40S ribosomal protein S9-A
Chain SY
40S ribosomal protein S24-A

Coloring options:


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