J5_8Y0U_013
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 8Y0U|1|C1|U|719, 8Y0U|1|C1|A|784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Y0U_013 not in the Motif Atlas
- Homologous match to J5_8P9A_012
- Geometric discrepancy: 0.0911
- The information below is about J5_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_56629.1
- Basepair signature
- cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8Y0U|1|C1|C|675
8Y0U|1|C1|G|676
8Y0U|1|C1|A|677
8Y0U|1|C1|G|678
*
8Y0U|1|C1|C|702
8Y0U|1|C1|G|703
8Y0U|1|C1|U|704
8Y0U|1|C1|A|705
8Y0U|1|C1|A|706
*
8Y0U|1|C1|U|713
8Y0U|1|C1|G|714
8Y0U|1|C1|A|715
8Y0U|1|C1|A|716
8Y0U|1|C1|C|717
8Y0U|1|C1|G|718
8Y0U|1|C1|U|719
8Y0U|1|C1|A|720
8Y0U|1|C1|G|721
*
8Y0U|1|C1|C|749
8Y0U|1|C1|G|750
8Y0U|1|C1|A|751
*
8Y0U|1|C1|U|782
8Y0U|1|C1|A|783
8Y0U|1|C1|A|784
8Y0U|1|C1|G|785
8Y0U|1|C1|A|786
8Y0U|1|C1|G|787
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Li
- Large ribosomal subunit protein eL36A
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