J5_8Y36_001

3D structure

PDB id

8Y36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryo-EM structure of Staphylococcus aureus(ATCC 29213) 50S ribosome in complex with MCX-190.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AAG

Length

22 nucleotides

Bulged bases

8Y36|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8Y36_001 not in the Motif Atlas

Homologous match to J5_4WF9_001

Geometric discrepancy: 0.1403

The information below is about J5_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.2

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8Y36|1|A|C|47
8Y36|1|A|G|48
8Y36|1|A|A|49
8Y36|1|A|U|50
8Y36|1|A|G|51
8Y36|1|A|A|52
8Y36|1|A|A|53
8Y36|1|A|G|54
*
8Y36|1|A|C|115
8Y36|1|A|G|116
8Y36|1|A|A|117
8Y36|1|A|A|118
8Y36|1|A|U|119
8Y36|1|A|G|120
*
8Y36|1|A|C|129
8Y36|1|A|A|130
*
8Y36|1|A|U|149
8Y36|1|A|A|150
8Y36|1|A|U|151
*
8Y36|1|A|A|178
8Y36|1|A|A|179
8Y36|1|A|G|180

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34