J5_8Y37_004
3D structure
- PDB id
- 8Y37 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Staphylococcus aureus (15B196) 50S ribosome in complex with MCX-190.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8Y37|1|A|G|1785, 8Y37|1|A|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Y37_004 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0873
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
8Y37|1|A|G|1718
8Y37|1|A|C|1719
8Y37|1|A|A|1720
8Y37|1|A|A|1721
8Y37|1|A|A|1722
8Y37|1|A|A|1723
8Y37|1|A|U|1724
8Y37|1|A|G|1725
8Y37|1|A|A|1726
*
8Y37|1|A|U|1750
8Y37|1|A|G|1751
*
8Y37|1|A|C|1778
8Y37|1|A|C|1779
*
8Y37|1|A|G|1783
8Y37|1|A|U|1784
8Y37|1|A|G|1785
8Y37|1|A|A|1786
8Y37|1|A|A|1787
8Y37|1|A|U|1788
8Y37|1|A|A|1789
8Y37|1|A|G|1790
8Y37|1|A|G|1791
*
8Y37|1|A|C|2015
8Y37|1|A|A|2016
8Y37|1|A|C|2017
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL3
- Chain I
- Large ribosomal subunit protein uL14
- Chain N
- Large ribosomal subunit protein bL19
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