J5_8Y5M_003
3D structure
- PDB id
- 8Y5M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 2 containing mRNA with 27-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 8Y5M|1|1|U|1255
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8Y5M_003 not in the Motif Atlas
- Homologous match to J5_8B0X_006
- Geometric discrepancy: 0.0952
- The information below is about J5_8B0X_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8Y5M|1|1|C|584
8Y5M|1|1|G|585
8Y5M|1|1|A|586
8Y5M|1|1|C|587
8Y5M|1|1|U|588
8Y5M|1|1|U|589
*
8Y5M|1|1|A|668
8Y5M|1|1|G|669
8Y5M|1|1|A|670
8Y5M|1|1|C|671
*
8Y5M|1|1|G|809
8Y5M|1|1|U|810
8Y5M|1|1|U|811
8Y5M|1|1|C|812
*
8Y5M|1|1|G|1195
8Y5M|1|1|C|1196
*
8Y5M|1|1|G|1250
8Y5M|1|1|C|1251
8Y5M|1|1|G|1252
8Y5M|1|1|A|1253
8Y5M|1|1|A|1254
8Y5M|1|1|U|1255
8Y5M|1|1|G|1256
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
Coloring options: