J5_8YDF_001
3D structure
- PDB id
- 8YDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CA*UAU*AGG
- Length
- 22 nucleotides
- Bulged bases
- 8YDF|1|1|U|50
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDF|1|1|C|47
8YDF|1|1|G|48
8YDF|1|1|A|49
8YDF|1|1|U|50
8YDF|1|1|G|51
8YDF|1|1|A|52
8YDF|1|1|A|53
8YDF|1|1|G|54
*
8YDF|1|1|C|116
8YDF|1|1|G|117
8YDF|1|1|A|118
8YDF|1|1|A|119
8YDF|1|1|U|120
8YDF|1|1|G|121
*
8YDF|1|1|C|130
8YDF|1|1|A|131
*
8YDF|1|1|U|148
8YDF|1|1|A|149
8YDF|1|1|U|150
*
8YDF|1|1|A|176
8YDF|1|1|G|177
8YDF|1|1|G|178
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
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