J5_8YDG_003
3D structure
- PDB id
- 8YDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-B state 3 (subclass2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CGACUUAU*AUAGAC*GUUC*GC*GCGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 8YDG|1|1|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDG|1|1|C|584
8YDG|1|1|G|585
8YDG|1|1|A|586
8YDG|1|1|C|587
8YDG|1|1|U|588
8YDG|1|1|U|589
8YDG|1|1|A|590
8YDG|1|1|U|591
*
8YDG|1|1|A|666
8YDG|1|1|U|667
8YDG|1|1|A|668
8YDG|1|1|G|669
8YDG|1|1|A|670
8YDG|1|1|C|671
*
8YDG|1|1|G|809
8YDG|1|1|U|810
8YDG|1|1|U|811
8YDG|1|1|C|812
*
8YDG|1|1|G|1195
8YDG|1|1|C|1196
*
8YDG|1|1|G|1250
8YDG|1|1|C|1251
8YDG|1|1|G|1252
8YDG|1|1|A|1253
8YDG|1|1|A|1254
8YDG|1|1|U|1255
8YDG|1|1|G|1256
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain E
- 50S ribosomal protein L35
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L15
- Chain q
- 50S ribosomal protein L20
- Chain r
- 50S ribosomal protein L21
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