J5_8YDH_004
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 8YDH|1|1|U|1758, 8YDH|1|1|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YDH_004 not in the Motif Atlas
- Homologous match to J5_8B0X_007
- Geometric discrepancy: 0.1146
- The information below is about J5_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.3
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
8YDH|1|1|G|1674
8YDH|1|1|C|1675
8YDH|1|1|A|1676
8YDH|1|1|A|1677
8YDH|1|1|A|1678
8YDH|1|1|A|1679
8YDH|1|1|U|1680
8YDH|1|1|G|1681
8YDH|1|1|G|1682
*
8YDH|1|1|C|1706
8YDH|1|1|G|1707
*
8YDH|1|1|U|1751
8YDH|1|1|C|1752
*
8YDH|1|1|G|1756
8YDH|1|1|A|1757
8YDH|1|1|U|1758
8YDH|1|1|A|1759
8YDH|1|1|C|1760
8YDH|1|1|C|1761
8YDH|1|1|A|1762
8YDH|1|1|G|1763
8YDH|1|1|C|1764
*
8YDH|1|1|G|1988
8YDH|1|1|G|1989
8YDH|1|1|C|1990
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
- Chain p
- 50S ribosomal protein L19
Coloring options: