J5_8YDH_008
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDH|1|3|C|36
8YDH|1|3|U|37
8YDH|1|3|G|38
8YDH|1|3|G|39
*
8YDH|1|3|C|403
8YDH|1|3|G|404
8YDH|1|3|U|405
8YDH|1|3|G|406
*
8YDH|1|3|C|436
8YDH|1|3|U|437
8YDH|1|3|U|438
8YDH|1|3|U|439
8YDH|1|3|C|440
8YDH|1|3|A|441
8YDH|1|3|G|442
*
8YDH|1|3|C|492
8YDH|1|3|A|493
8YDH|1|3|G|494
8YDH|1|3|A|495
8YDH|1|3|A|496
8YDH|1|3|G|497
8YDH|1|3|A|498
8YDH|1|3|A|499
8YDH|1|3|G|500
*
8YDH|1|3|C|545
8YDH|1|3|A|546
8YDH|1|3|A|547
8YDH|1|3|G|548
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
- Chain Q
- 30S ribosomal protein S12
Coloring options: