J5_8YDH_009
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8YDH|1|3|A|109, 8YDH|1|3|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDH|1|3|C|58
8YDH|1|3|A|59
8YDH|1|3|A|60
8YDH|1|3|G|61
*
8YDH|1|3|C|106
8YDH|1|3|G|107
8YDH|1|3|G|108
8YDH|1|3|A|109
8YDH|1|3|C|110
8YDH|1|3|G|111
8YDH|1|3|G|112
8YDH|1|3|G|113
*
8YDH|1|3|C|314
8YDH|1|3|A|315
8YDH|1|3|C|316
*
8YDH|1|3|G|337
8YDH|1|3|A|338
8YDH|1|3|C|339
*
8YDH|1|3|G|350
8YDH|1|3|G|351
8YDH|1|3|C|352
8YDH|1|3|A|353
8YDH|1|3|G|354
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain U
- 30S ribosomal protein S16
- Chain Y
- 30S ribosomal protein S20
- Chain k
- 50S ribosomal protein L14
- Chain p
- 50S ribosomal protein L19
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