J5_8YLD_003
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GCAG
- Length
- 22 nucleotides
- Bulged bases
- 8YLD|1|2|A|93, 8YLD|1|2|C|424
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YLD_003 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.5363
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8YLD|1|2|C|54
8YLD|1|2|A|55
8YLD|1|2|U|56
8YLD|1|2|G|57
*
8YLD|1|2|C|90
8YLD|1|2|G|91
8YLD|1|2|A|92
8YLD|1|2|A|93
8YLD|1|2|U|94
8YLD|1|2|G|95
8YLD|1|2|G|96
8YLD|1|2|C|97
*
8YLD|1|2|G|386
8YLD|1|2|A|387
8YLD|1|2|G|388
*
8YLD|1|2|C|409
8YLD|1|2|A|410
8YLD|1|2|C|411
*
8YLD|1|2|G|423
8YLD|1|2|C|424
8YLD|1|2|A|425
8YLD|1|2|G|426
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sd
- Small ribosomal subunit protein eS24A
- Chain X
- Large ribosomal subunit protein uL14A
- Chain x
- Elongation factor 2
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