J5_8YLR_006

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU

Length

37 nucleotides

Bulged bases

8YLR|1|2|U|638, 8YLR|1|2|U|639, 8YLR|1|2|U|694, 8YLR|1|2|C|696, 8YLR|1|2|C|697, 8YLR|1|2|U|698, 8YLR|1|2|U|742, 8YLR|1|2|U|813, 8YLR|1|2|G|815, 8YLR|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|A|636
8YLR|1|2|C|637
8YLR|1|2|U|638
8YLR|1|2|U|639
8YLR|1|2|U|640
8YLR|1|2|G|641
*
8YLR|1|2|U|693
8YLR|1|2|U|694
8YLR|1|2|U|695
8YLR|1|2|C|696
8YLR|1|2|C|697
8YLR|1|2|U|698
8YLR|1|2|U|699
*
8YLR|1|2|G|739
8YLR|1|2|A|740
8YLR|1|2|C|741
8YLR|1|2|U|742
8YLR|1|2|U|743
8YLR|1|2|U|744
*
8YLR|1|2|A|807
8YLR|1|2|U|808
8YLR|1|2|A|809
8YLR|1|2|G|810
8YLR|1|2|A|811
8YLR|1|2|A|812
8YLR|1|2|U|813
8YLR|1|2|A|814
8YLR|1|2|G|815
8YLR|1|2|G|816
8YLR|1|2|A|817
*
8YLR|1|2|U|854
8YLR|1|2|A|855
8YLR|1|2|A|856
8YLR|1|2|U|857
8YLR|1|2|G|858
8YLR|1|2|A|859
8YLR|1|2|U|860

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SU

Small ribosomal subunit protein eS7A

Chain SX

Small ribosomal subunit protein uS17A

Chain SY

Small ribosomal subunit protein uS15

Chain Sb

Small ribosomal subunit protein uS8A

Chain T

Large ribosomal subunit protein eL19A