J5_8YLR_007
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8YLR|1|C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YLR_007 not in the Motif Atlas
- Homologous match to J5_8C3A_001
- Geometric discrepancy: 0.0953
- The information below is about J5_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLR|1|A|A|20
8YLR|1|A|G|21
8YLR|1|A|G|22
*
8YLR|1|C|C|35
8YLR|1|C|G|36
8YLR|1|C|A|37
8YLR|1|C|U|38
8YLR|1|C|G|39
8YLR|1|C|A|40
8YLR|1|C|A|41
8YLR|1|C|G|42
*
8YLR|1|C|U|102
8YLR|1|C|G|103
8YLR|1|C|A|104
8YLR|1|C|A|105
8YLR|1|C|C|106
8YLR|1|C|G|107
*
8YLR|1|C|C|115
8YLR|1|C|G|116
*
8YLR|1|C|C|137
8YLR|1|C|A|138
8YLR|1|C|U|139
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein eL15A
- Chain Z
- Large ribosomal subunit protein uL23
- Chain j
- Large ribosomal subunit protein uL29A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: