J5_8YLR_008
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8YLR|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YLR_008 not in the Motif Atlas
- Homologous match to J5_8P9A_011
- Geometric discrepancy: 0.1021
- The information below is about J5_8P9A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8YLR|1|A|G|658
8YLR|1|A|G|659
8YLR|1|A|A|660
8YLR|1|A|G|661
8YLR|1|A|U|662
8YLR|1|A|C|663
*
8YLR|1|A|G|799
8YLR|1|A|G|800
8YLR|1|A|A|801
8YLR|1|A|C|802
*
8YLR|1|A|G|941
8YLR|1|A|U|942
8YLR|1|A|U|943
8YLR|1|A|C|944
*
8YLR|1|A|G|1375
8YLR|1|A|C|1376
*
8YLR|1|A|G|1431
8YLR|1|A|C|1432
8YLR|1|A|A|1433
8YLR|1|A|G|1434
8YLR|1|A|A|1435
8YLR|1|A|U|1436
8YLR|1|A|C|1437
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain F
- Large ribosomal subunit protein uL4A
- Chain N
- Large ribosomal subunit protein eL13A
- Chain P
- Large ribosomal subunit protein eL15A
- Chain c
- Large ribosomal subunit protein uL15
- Chain g
- Large ribosomal subunit protein eL32
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