J5_8YLR_010

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUC*GGUUAGUCGAUC*GGAAU*AACC*GGUCGUAC

Length

34 nucleotides

Bulged bases

8YLR|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|A|G|1492
8YLR|1|A|G|1493
8YLR|1|A|U|1494
8YLR|1|A|U|1495
8YLR|1|A|C|1496
*
8YLR|1|A|G|1520
8YLR|1|A|G|1521
8YLR|1|A|U|1522
8YLR|1|A|U|1523
8YLR|1|A|A|1524
8YLR|1|A|G|1525
8YLR|1|A|U|1526
8YLR|1|A|C|1527
8YLR|1|A|G|1528
8YLR|1|A|A|1529
8YLR|1|A|U|1530
8YLR|1|A|C|1531
*
8YLR|1|A|G|1591
8YLR|1|A|G|1592
8YLR|1|A|A|1593
8YLR|1|A|A|1594
8YLR|1|A|U|1595
*
8YLR|1|A|A|1612
8YLR|1|A|A|1613
8YLR|1|A|C|1614
8YLR|1|A|C|1615
*
8YLR|1|A|G|1829
8YLR|1|A|G|1830
8YLR|1|A|U|1831
8YLR|1|A|C|1832
8YLR|1|A|G|1833
8YLR|1|A|U|1834
8YLR|1|A|A|1835
8YLR|1|A|C|1836

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain T

Large ribosomal subunit protein eL19A

Chain Z

Large ribosomal subunit protein uL23

Chain i

Large ribosomal subunit protein eL34A

Chain l

Large ribosomal subunit protein eL37A

Chain m

Large ribosomal subunit protein eL38

Chain n

Large ribosomal subunit protein eL39