J5_8YLR_011
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8YLR|1|A|G|2116, 8YLR|1|A|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8YLR_011 not in the Motif Atlas
- Homologous match to J5_8C3A_004
- Geometric discrepancy: 0.1289
- The information below is about J5_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLR|1|A|G|1906
8YLR|1|A|C|1907
8YLR|1|A|A|1908
8YLR|1|A|A|1909
8YLR|1|A|A|1910
8YLR|1|A|A|1911
8YLR|1|A|U|1912
8YLR|1|A|A|1913
8YLR|1|A|G|1914
*
8YLR|1|A|U|1938
8YLR|1|A|G|1939
*
8YLR|1|A|U|2109
8YLR|1|A|G|2110
*
8YLR|1|A|C|2114
8YLR|1|A|G|2115
8YLR|1|A|G|2116
8YLR|1|A|A|2117
8YLR|1|A|C|2118
8YLR|1|A|A|2119
8YLR|1|A|A|2120
8YLR|1|A|G|2121
8YLR|1|A|G|2122
*
8YLR|1|A|C|2331
8YLR|1|A|A|2332
8YLR|1|A|C|2333
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- Large ribosomal subunit protein uL3
- Chain T
- Large ribosomal subunit protein eL19A
- Chain X
- Large ribosomal subunit protein uL14A
- Chain Y
- Large ribosomal subunit protein eL24A
Coloring options: