J5_8YLR_012
3D structure
- PDB id
- 8YLR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUCG*UGGGUUUAG*UAGUUU
- Length
- 43 nucleotides
- Bulged bases
- 8YLR|1|A|A|2404, 8YLR|1|A|A|2817, 8YLR|1|A|U|2873, 8YLR|1|A|U|2978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YLR|1|A|A|2399
8YLR|1|A|G|2400
8YLR|1|A|A|2401
8YLR|1|A|A|2402
8YLR|1|A|G|2403
8YLR|1|A|A|2404
8YLR|1|A|C|2405
8YLR|1|A|C|2406
*
8YLR|1|A|G|2815
8YLR|1|A|G|2816
8YLR|1|A|A|2817
8YLR|1|A|U|2818
8YLR|1|A|A|2819
8YLR|1|A|A|2820
8YLR|1|A|C|2821
8YLR|1|A|U|2822
8YLR|1|A|G|2823
*
8YLR|1|A|C|2867
8YLR|1|A|U|2868
8YLR|1|A|U|2869
8YLR|1|A|C|2870
8YLR|1|A|G|2871
8YLR|1|A|A|2872
8YLR|1|A|U|2873
8YLR|1|A|G|2874
8YLR|1|A|U|2875
8YLR|1|A|C|2876
8YLR|1|A|G|2877
*
8YLR|1|A|U|2949
8YLR|1|A|G|2950
8YLR|1|A|G|2951
8YLR|1|A|G|2952
8YLR|1|A|U|2953
8YLR|1|A|U|2954
8YLR|1|A|U|2955
8YLR|1|A|A|2956
8YLR|1|A|G|2957
*
8YLR|1|A|U|2975
8YLR|1|A|A|2976
8YLR|1|A|G|2977
8YLR|1|A|U|2978
8YLR|1|A|U|2979
8YLR|1|A|U|2980
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain E
- Large ribosomal subunit protein uL3
- Chain F
- Large ribosomal subunit protein uL4A
- Chain R
- Large ribosomal subunit protein uL22A
- Chain d
- Large ribosomal subunit protein eL29
- Chain t
- Transfer RNA; tRNA
Coloring options: