3D structure

PDB id
8YUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.25 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
8YUO|1|A|A|109, 8YUO|1|A|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8YUO_003 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.1185
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8YUO|1|A|C|58
8YUO|1|A|A|59
8YUO|1|A|A|60
8YUO|1|A|G|61
*
8YUO|1|A|C|106
8YUO|1|A|G|107
8YUO|1|A|G|108
8YUO|1|A|A|109
8YUO|1|A|C|110
8YUO|1|A|G|111
8YUO|1|A|G|112
8YUO|1|A|G|113
*
8YUO|1|A|C|314
8YUO|1|A|A|315
8YUO|1|A|C|316
*
8YUO|1|A|G|337
8YUO|1|A|A|338
8YUO|1|A|C|339
*
8YUO|1|A|G|350
8YUO|1|A|G|351
8YUO|1|A|C|352
8YUO|1|A|A|353
8YUO|1|A|G|354

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain T
30S ribosomal protein S20
Chain j
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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