J5_8YUO_007

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

8YUO|1|a|U|1758, 8YUO|1|a|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8YUO_007 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.048

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8YUO|1|a|G|1674
8YUO|1|a|C|1675
8YUO|1|a|A|1676
8YUO|1|a|A|1677
8YUO|1|a|A|1678
8YUO|1|a|A|1679
8YUO|1|a|U|1680
8YUO|1|a|G|1681
8YUO|1|a|G|1682
*
8YUO|1|a|C|1706
8YUO|1|a|G|1707
*
8YUO|1|a|U|1751
8YUO|1|a|C|1752
*
8YUO|1|a|G|1756
8YUO|1|a|A|1757
8YUO|1|a|U|1758
8YUO|1|a|A|1759
8YUO|1|a|C|1760
8YUO|1|a|C|1761
8YUO|1|a|A|1762
8YUO|1|a|G|1763
8YUO|1|a|C|1764
*
8YUO|1|a|G|1988
8YUO|1|a|G|1989
8YUO|1|a|C|1990

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain d

50S ribosomal protein L3

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19