3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
8YUQ|1|A|A|109, 8YUQ|1|A|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8YUQ_003 not in the Motif Atlas
Homologous match to J5_6CZR_021
Geometric discrepancy: 0.1317
The information below is about J5_6CZR_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.5
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

8YUQ|1|A|C|58
8YUQ|1|A|A|59
8YUQ|1|A|A|60
8YUQ|1|A|G|61
*
8YUQ|1|A|C|106
8YUQ|1|A|G|107
8YUQ|1|A|G|108
8YUQ|1|A|A|109
8YUQ|1|A|C|110
8YUQ|1|A|G|111
8YUQ|1|A|G|112
8YUQ|1|A|G|113
*
8YUQ|1|A|C|314
8YUQ|1|A|A|315
8YUQ|1|A|C|316
*
8YUQ|1|A|G|337
8YUQ|1|A|A|338
8YUQ|1|A|C|339
*
8YUQ|1|A|G|350
8YUQ|1|A|G|351
8YUQ|1|A|C|352
8YUQ|1|A|A|353
8YUQ|1|A|G|354

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain T
30S ribosomal protein S20
Chain j
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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