3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
8YUQ|1|a|U|1758, 8YUQ|1|a|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8YUQ_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.0405
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

8YUQ|1|a|G|1674
8YUQ|1|a|C|1675
8YUQ|1|a|A|1676
8YUQ|1|a|A|1677
8YUQ|1|a|A|1678
8YUQ|1|a|A|1679
8YUQ|1|a|U|1680
8YUQ|1|a|G|1681
8YUQ|1|a|G|1682
*
8YUQ|1|a|C|1706
8YUQ|1|a|G|1707
*
8YUQ|1|a|U|1751
8YUQ|1|a|C|1752
*
8YUQ|1|a|G|1756
8YUQ|1|a|A|1757
8YUQ|1|a|U|1758
8YUQ|1|a|A|1759
8YUQ|1|a|C|1760
8YUQ|1|a|C|1761
8YUQ|1|a|A|1762
8YUQ|1|a|G|1763
8YUQ|1|a|C|1764
*
8YUQ|1|a|G|1988
8YUQ|1|a|G|1989
8YUQ|1|a|C|1990

Current chains

Chain a
23S rRNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain d
50S ribosomal protein L3
Chain j
50S ribosomal protein L14
Chain o
50S ribosomal protein L19

Coloring options:


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