J5_8Z70_009

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8Z70|1|A|U|719, 8Z70|1|A|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8Z70_009 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.1094

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_23272.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8Z70|1|A|C|675
8Z70|1|A|G|676
8Z70|1|A|A|677
8Z70|1|A|G|678
*
8Z70|1|A|C|702
8Z70|1|A|G|703
8Z70|1|A|U|704
8Z70|1|A|A|705
8Z70|1|A|A|706
*
8Z70|1|A|U|713
8Z70|1|A|G|714
8Z70|1|A|A|715
8Z70|1|A|A|716
8Z70|1|A|C|717
8Z70|1|A|G|718
8Z70|1|A|U|719
8Z70|1|A|A|720
8Z70|1|A|G|721
*
8Z70|1|A|C|749
8Z70|1|A|G|750
8Z70|1|A|A|751
*
8Z70|1|A|U|782
8Z70|1|A|A|783
8Z70|1|A|A|784
8Z70|1|A|G|785
8Z70|1|A|A|786
8Z70|1|A|G|787

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain N

Large ribosomal subunit protein eL13A

Chain S

Large ribosomal subunit protein eL18A

Chain c

Large ribosomal subunit protein uL15

Chain d

Large ribosomal subunit protein eL29

Chain k

Large ribosomal subunit protein eL36A