J5_8Z70_014

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

8Z70|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8Z70_014 not in the Motif Atlas

Homologous match to J5_8CRE_018

Geometric discrepancy: 0.1268

The information below is about J5_8CRE_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_80702.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8Z70|1|2|C|31
8Z70|1|2|U|32
8Z70|1|2|U|33
8Z70|1|2|G|34
8Z70|1|2|U|35
*
8Z70|1|2|A|473
8Z70|1|2|A|474
8Z70|1|2|A|475
8Z70|1|2|U|476
8Z70|1|2|A|477
8Z70|1|2|A|478
8Z70|1|2|C|479
*
8Z70|1|2|G|509
8Z70|1|2|G|510
8Z70|1|2|A|511
8Z70|1|2|A|512
8Z70|1|2|U|513
8Z70|1|2|G|514
*
8Z70|1|2|C|543
8Z70|1|2|A|544
8Z70|1|2|A|545
8Z70|1|2|U|546
*
8Z70|1|2|A|592
8Z70|1|2|U|593
8Z70|1|2|A|594
8Z70|1|2|G|595

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A

Chain Sg

Small ribosomal subunit protein eS30A