J5_8Z71_009

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG

Length

27 nucleotides

Bulged bases

8Z71|1|A|U|719, 8Z71|1|A|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8Z71_009 not in the Motif Atlas

Homologous match to J5_8P9A_012

Geometric discrepancy: 0.1094

The information below is about J5_8P9A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_56629.1

Basepair signature

cWW-F-F-tSS-F-cWW-cWW-F-F-cWW-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8Z71|1|A|C|675
8Z71|1|A|G|676
8Z71|1|A|A|677
8Z71|1|A|G|678
*
8Z71|1|A|C|702
8Z71|1|A|G|703
8Z71|1|A|U|704
8Z71|1|A|A|705
8Z71|1|A|A|706
*
8Z71|1|A|U|713
8Z71|1|A|G|714
8Z71|1|A|A|715
8Z71|1|A|A|716
8Z71|1|A|C|717
8Z71|1|A|G|718
8Z71|1|A|U|719
8Z71|1|A|A|720
8Z71|1|A|G|721
*
8Z71|1|A|C|749
8Z71|1|A|G|750
8Z71|1|A|A|751
*
8Z71|1|A|U|782
8Z71|1|A|A|783
8Z71|1|A|A|784
8Z71|1|A|G|785
8Z71|1|A|A|786
8Z71|1|A|G|787

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

Large ribosomal subunit protein uL4A

Chain N

Large ribosomal subunit protein eL13A

Chain S

Large ribosomal subunit protein eL18A

Chain c

Large ribosomal subunit protein uL15

Chain d

Large ribosomal subunit protein eL29

Chain k

Large ribosomal subunit protein eL36A