J5_8ZDC_003

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCUCG*CGGG*UG*CCG*CG

Length

17 nucleotides

Bulged bases

8ZDC|1|2|G|126, 8ZDC|1|2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZDC|1|2|C|125
8ZDC|1|2|G|126
8ZDC|1|2|C|127
8ZDC|1|2|U|128
8ZDC|1|2|C|129
8ZDC|1|2|G|130
*
8ZDC|1|2|C|182
8ZDC|1|2|G|183
8ZDC|1|2|G|184
8ZDC|1|2|G|185
*
8ZDC|1|2|U|214
8ZDC|1|2|G|215
*
8ZDC|1|2|C|310
8ZDC|1|2|C|311
8ZDC|1|2|G|312
*
8ZDC|1|2|C|337
8ZDC|1|2|G|338

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain I

Small ribosomal subunit protein eS8