J5_8ZFF_004

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8ZFF|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFF|1|a|C|47
8ZFF|1|a|G|48
8ZFF|1|a|A|49
8ZFF|1|a|U|50
8ZFF|1|a|G|51
8ZFF|1|a|A|52
8ZFF|1|a|A|53
8ZFF|1|a|G|54
*
8ZFF|1|a|C|116
8ZFF|1|a|G|117
8ZFF|1|a|A|118
8ZFF|1|a|A|119
8ZFF|1|a|U|120
8ZFF|1|a|G|121
*
8ZFF|1|a|C|130
8ZFF|1|a|A|131
*
8ZFF|1|a|U|148
8ZFF|1|a|A|149
8ZFF|1|a|U|150
*
8ZFF|1|a|A|176
8ZFF|1|a|G|177
8ZFF|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34