J5_8ZFG_004

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

8ZFG|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8ZFG|1|a|C|47
8ZFG|1|a|G|48
8ZFG|1|a|A|49
8ZFG|1|a|U|50
8ZFG|1|a|G|51
8ZFG|1|a|A|52
8ZFG|1|a|A|53
8ZFG|1|a|G|54
*
8ZFG|1|a|C|116
8ZFG|1|a|G|117
8ZFG|1|a|A|118
8ZFG|1|a|A|119
8ZFG|1|a|U|120
8ZFG|1|a|G|121
*
8ZFG|1|a|C|130
8ZFG|1|a|A|131
*
8ZFG|1|a|U|148
8ZFG|1|a|A|149
8ZFG|1|a|U|150
*
8ZFG|1|a|A|176
8ZFG|1|a|G|177
8ZFG|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34