J5_8ZGR_007
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUGUCUCAAA*UGACAAUAAAUAAC*GGAAUG*CAAUU*AAUAG
- Length
- 41 nucleotides
- Bulged bases
- 8ZGR|1|S2|U|33, 8ZGR|1|S2|G|510, 8ZGR|1|S2|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGR|1|S2|C|31
8ZGR|1|S2|U|32
8ZGR|1|S2|U|33
8ZGR|1|S2|G|34
8ZGR|1|S2|U|35
8ZGR|1|S2|C|36
8ZGR|1|S2|U|37
8ZGR|1|S2|C|38
8ZGR|1|S2|A|39
8ZGR|1|S2|A|40
8ZGR|1|S2|A|41
*
8ZGR|1|S2|U|466
8ZGR|1|S2|G|467
8ZGR|1|S2|A|468
8ZGR|1|S2|C|469
8ZGR|1|S2|A|470
8ZGR|1|S2|A|471
8ZGR|1|S2|U|472
8ZGR|1|S2|A|473
8ZGR|1|S2|A|474
8ZGR|1|S2|A|475
8ZGR|1|S2|U|476
8ZGR|1|S2|A|477
8ZGR|1|S2|A|478
8ZGR|1|S2|C|479
*
8ZGR|1|S2|G|509
8ZGR|1|S2|G|510
8ZGR|1|S2|A|511
8ZGR|1|S2|A|512
8ZGR|1|S2|U|513
8ZGR|1|S2|G|514
*
8ZGR|1|S2|C|543
8ZGR|1|S2|A|544
8ZGR|1|S2|A|545
8ZGR|1|S2|U|546
8ZGR|1|S2|U|547
*
8ZGR|1|S2|A|591
8ZGR|1|S2|A|592
8ZGR|1|S2|U|593
8ZGR|1|S2|A|594
8ZGR|1|S2|G|595
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sc
- Small ribosomal subunit protein uS12A
- Chain Sd
- Small ribosomal subunit protein eS24A
- Chain Sg
- Small ribosomal subunit protein eS30A
Coloring options: