J5_8ZGR_009
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
- Length
- 44 nucleotides
- Bulged bases
- 8ZGR|1|S2|U|129, 8ZGR|1|S2|C|130, 8ZGR|1|S2|C|131, 8ZGR|1|S2|U|132, 8ZGR|1|S2|U|133, 8ZGR|1|S2|U|134, 8ZGR|1|S2|A|135, 8ZGR|1|S2|C|136, 8ZGR|1|S2|U|137, 8ZGR|1|S2|A|140, 8ZGR|1|S2|U|141, 8ZGR|1|S2|U|177, 8ZGR|1|S2|U|178, 8ZGR|1|S2|U|292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGR|1|S2|A|124
8ZGR|1|S2|U|125
8ZGR|1|S2|A|126
8ZGR|1|S2|G|127
8ZGR|1|S2|U|128
8ZGR|1|S2|U|129
8ZGR|1|S2|C|130
8ZGR|1|S2|C|131
8ZGR|1|S2|U|132
8ZGR|1|S2|U|133
8ZGR|1|S2|U|134
8ZGR|1|S2|A|135
8ZGR|1|S2|C|136
8ZGR|1|S2|U|137
8ZGR|1|S2|A|138
8ZGR|1|S2|C|139
8ZGR|1|S2|A|140
8ZGR|1|S2|U|141
8ZGR|1|S2|G|142
8ZGR|1|S2|G|143
*
8ZGR|1|S2|C|172
8ZGR|1|S2|A|173
8ZGR|1|S2|U|174
8ZGR|1|S2|G|175
8ZGR|1|S2|C|176
8ZGR|1|S2|U|177
8ZGR|1|S2|U|178
8ZGR|1|S2|A|179
8ZGR|1|S2|A|180
8ZGR|1|S2|A|181
8ZGR|1|S2|A|182
*
8ZGR|1|S2|U|203
8ZGR|1|S2|G|204
*
8ZGR|1|S2|C|263
8ZGR|1|S2|G|264
8ZGR|1|S2|A|265
8ZGR|1|S2|A|266
8ZGR|1|S2|U|267
*
8ZGR|1|S2|A|288
8ZGR|1|S2|U|289
8ZGR|1|S2|G|290
8ZGR|1|S2|G|291
8ZGR|1|S2|U|292
8ZGR|1|S2|U|293
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
Coloring options: