J5_8ZGR_010
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACUUUGG*CUUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 41 nucleotides
- Bulged bases
- 8ZGR|1|S2|U|639, 8ZGR|1|S2|U|694, 8ZGR|1|S2|C|696, 8ZGR|1|S2|C|697, 8ZGR|1|S2|U|698, 8ZGR|1|S2|U|742, 8ZGR|1|S2|U|743, 8ZGR|1|S2|U|813, 8ZGR|1|S2|G|815, 8ZGR|1|S2|A|856, 8ZGR|1|S2|A|859
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGR|1|S2|A|636
8ZGR|1|S2|C|637
8ZGR|1|S2|U|638
8ZGR|1|S2|U|639
8ZGR|1|S2|U|640
8ZGR|1|S2|G|641
8ZGR|1|S2|G|642
*
8ZGR|1|S2|C|692
8ZGR|1|S2|U|693
8ZGR|1|S2|U|694
8ZGR|1|S2|U|695
8ZGR|1|S2|C|696
8ZGR|1|S2|C|697
8ZGR|1|S2|U|698
8ZGR|1|S2|U|699
8ZGR|1|S2|C|700
*
8ZGR|1|S2|G|738
8ZGR|1|S2|G|739
8ZGR|1|S2|A|740
8ZGR|1|S2|C|741
8ZGR|1|S2|U|742
8ZGR|1|S2|U|743
8ZGR|1|S2|U|744
*
8ZGR|1|S2|A|807
8ZGR|1|S2|U|808
8ZGR|1|S2|A|809
8ZGR|1|S2|G|810
8ZGR|1|S2|A|811
8ZGR|1|S2|A|812
8ZGR|1|S2|U|813
8ZGR|1|S2|A|814
8ZGR|1|S2|G|815
8ZGR|1|S2|G|816
8ZGR|1|S2|A|817
*
8ZGR|1|S2|U|854
8ZGR|1|S2|A|855
8ZGR|1|S2|A|856
8ZGR|1|S2|U|857
8ZGR|1|S2|G|858
8ZGR|1|S2|A|859
8ZGR|1|S2|U|860
Current chains
- Chain S2
- chain 2 18S rRNA (1800-MER)
Nearby chains
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SU
- Small ribosomal subunit protein eS7A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
Coloring options: