J5_8ZGY_001
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 8ZGY|1|LC|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZGY_001 not in the Motif Atlas
- Homologous match to J5_8CRE_001
- Geometric discrepancy: 0.0456
- The information below is about J5_8CRE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8ZGY|1|LA|A|20
8ZGY|1|LA|G|21
8ZGY|1|LA|G|22
*
8ZGY|1|LC|C|35
8ZGY|1|LC|G|36
8ZGY|1|LC|A|37
8ZGY|1|LC|U|38
8ZGY|1|LC|G|39
8ZGY|1|LC|A|40
8ZGY|1|LC|A|41
8ZGY|1|LC|G|42
*
8ZGY|1|LC|U|102
8ZGY|1|LC|G|103
8ZGY|1|LC|A|104
8ZGY|1|LC|A|105
8ZGY|1|LC|C|106
8ZGY|1|LC|G|107
*
8ZGY|1|LC|C|115
8ZGY|1|LC|G|116
*
8ZGY|1|LC|C|137
8ZGY|1|LC|A|138
8ZGY|1|LC|U|139
Current chains
- Chain LA
- 25S rRNA (3393-MER)
- Chain LC
- 5.8S rRNA (158-MER)
Nearby chains
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain LZ
- Large ribosomal subunit protein uL23
- Chain Lj
- Large ribosomal subunit protein uL29A
- Chain Ll
- Large ribosomal subunit protein eL37A
- Chain Ln
- Large ribosomal subunit protein eL39
Coloring options: