3D structure

PDB id
8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S ribosome with P/E tRNA and mRNA of WNV
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AGG*CGAUGAAG*UGAACG*CG*CAU
Length
22 nucleotides
Bulged bases
8ZGY|1|LC|U|38
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_8ZGY_001 not in the Motif Atlas
Homologous match to J5_8CRE_001
Geometric discrepancy: 0.0456
The information below is about J5_8CRE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

8ZGY|1|LA|A|20
8ZGY|1|LA|G|21
8ZGY|1|LA|G|22
*
8ZGY|1|LC|C|35
8ZGY|1|LC|G|36
8ZGY|1|LC|A|37
8ZGY|1|LC|U|38
8ZGY|1|LC|G|39
8ZGY|1|LC|A|40
8ZGY|1|LC|A|41
8ZGY|1|LC|G|42
*
8ZGY|1|LC|U|102
8ZGY|1|LC|G|103
8ZGY|1|LC|A|104
8ZGY|1|LC|A|105
8ZGY|1|LC|C|106
8ZGY|1|LC|G|107
*
8ZGY|1|LC|C|115
8ZGY|1|LC|G|116
*
8ZGY|1|LC|C|137
8ZGY|1|LC|A|138
8ZGY|1|LC|U|139

Current chains

Chain LA
25S rRNA (3393-MER)
Chain LC
5.8S rRNA (158-MER)

Nearby chains

Chain LP
Large ribosomal subunit protein eL15A
Chain LZ
Large ribosomal subunit protein uL23
Chain Lj
Large ribosomal subunit protein uL29A
Chain Ll
Large ribosomal subunit protein eL37A
Chain Ln
Large ribosomal subunit protein eL39

Coloring options:


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