J5_8ZGY_004
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 8ZGY|1|LA|G|2115, 8ZGY|1|LA|G|2120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZGY_004 not in the Motif Atlas
- Homologous match to J5_8CRE_004
- Geometric discrepancy: 0.0635
- The information below is about J5_8CRE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8ZGY|1|LA|G|1905
8ZGY|1|LA|C|1906
8ZGY|1|LA|A|1907
8ZGY|1|LA|A|1908
8ZGY|1|LA|A|1909
8ZGY|1|LA|A|1910
8ZGY|1|LA|U|1911
8ZGY|1|LA|A|1912
8ZGY|1|LA|G|1913
*
8ZGY|1|LA|U|1937
8ZGY|1|LA|G|1938
*
8ZGY|1|LA|U|2108
8ZGY|1|LA|G|2109
*
8ZGY|1|LA|C|2113
8ZGY|1|LA|G|2114
8ZGY|1|LA|G|2115
8ZGY|1|LA|A|2116
8ZGY|1|LA|C|2117
8ZGY|1|LA|A|2118
8ZGY|1|LA|A|2119
8ZGY|1|LA|G|2120
8ZGY|1|LA|G|2121
*
8ZGY|1|LA|C|2330
8ZGY|1|LA|A|2331
8ZGY|1|LA|C|2332
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain LX
- Large ribosomal subunit protein uL14A
- Chain LY
- Large ribosomal subunit protein eL24A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: