J5_8ZGY_006
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 8ZGY|1|LA|G|2417, 8ZGY|1|LA|A|2798, 8ZGY|1|LA|G|2799, 8ZGY|1|LA|A|2800, 8ZGY|1|LA|A|2801
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZGY_006 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.2417
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08912.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8ZGY|1|LA|U|2415
8ZGY|1|LA|U|2416
8ZGY|1|LA|G|2417
8ZGY|1|LA|A|2418
*
8ZGY|1|LA|U|2610
8ZGY|1|LA|U|2611
8ZGY|1|LA|U|2612
8ZGY|1|LA|G|2613
*
8ZGY|1|LA|C|2626
8ZGY|1|LA|A|2627
*
8ZGY|1|LA|U|2649
8ZGY|1|LA|G|2650
*
8ZGY|1|LA|C|2797
8ZGY|1|LA|A|2798
8ZGY|1|LA|G|2799
8ZGY|1|LA|A|2800
8ZGY|1|LA|A|2801
8ZGY|1|LA|A|2802
8ZGY|1|LA|A|2803
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain LS
- Large ribosomal subunit protein eL18A
- Chain LV
- Large ribosomal subunit protein eL21A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Ld
- Large ribosomal subunit protein eL29
- Chain Lq
- Large ribosomal subunit protein eL42A
- Chain Tb
- Transfer RNA; tRNA
Coloring options: