J5_8ZGY_012
3D structure
- PDB id
- 8ZGY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACUUUGG*CUUUCCUUC*GGACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 41 nucleotides
- Bulged bases
- 8ZGY|1|S2|U|638, 8ZGY|1|S2|U|639, 8ZGY|1|S2|U|694, 8ZGY|1|S2|C|696, 8ZGY|1|S2|C|697, 8ZGY|1|S2|U|698, 8ZGY|1|S2|A|740, 8ZGY|1|S2|C|741, 8ZGY|1|S2|U|742, 8ZGY|1|S2|U|813, 8ZGY|1|S2|G|815, 8ZGY|1|S2|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZGY|1|S2|A|636
8ZGY|1|S2|C|637
8ZGY|1|S2|U|638
8ZGY|1|S2|U|639
8ZGY|1|S2|U|640
8ZGY|1|S2|G|641
8ZGY|1|S2|G|642
*
8ZGY|1|S2|C|692
8ZGY|1|S2|U|693
8ZGY|1|S2|U|694
8ZGY|1|S2|U|695
8ZGY|1|S2|C|696
8ZGY|1|S2|C|697
8ZGY|1|S2|U|698
8ZGY|1|S2|U|699
8ZGY|1|S2|C|700
*
8ZGY|1|S2|G|738
8ZGY|1|S2|G|739
8ZGY|1|S2|A|740
8ZGY|1|S2|C|741
8ZGY|1|S2|U|742
8ZGY|1|S2|U|743
8ZGY|1|S2|U|744
*
8ZGY|1|S2|A|807
8ZGY|1|S2|U|808
8ZGY|1|S2|A|809
8ZGY|1|S2|G|810
8ZGY|1|S2|A|811
8ZGY|1|S2|A|812
8ZGY|1|S2|U|813
8ZGY|1|S2|A|814
8ZGY|1|S2|G|815
8ZGY|1|S2|G|816
8ZGY|1|S2|A|817
*
8ZGY|1|S2|U|854
8ZGY|1|S2|A|855
8ZGY|1|S2|A|856
8ZGY|1|S2|U|857
8ZGY|1|S2|G|858
8ZGY|1|S2|A|859
8ZGY|1|S2|U|860
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain SU
- Small ribosomal subunit protein eS7A
- Chain SX
- Small ribosomal subunit protein uS17A
- Chain SY
- Small ribosomal subunit protein uS15
- Chain Sb
- Small ribosomal subunit protein uS8A
Coloring options: