J5_8ZH3_002
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8ZH3|1|LA|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_8ZH3_002 not in the Motif Atlas
- Homologous match to J5_8CRE_002
- Geometric discrepancy: 0.0403
- The information below is about J5_8CRE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_63811.1
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8ZH3|1|LA|G|658
8ZH3|1|LA|G|659
8ZH3|1|LA|A|660
8ZH3|1|LA|G|661
8ZH3|1|LA|U|662
8ZH3|1|LA|C|663
*
8ZH3|1|LA|G|799
8ZH3|1|LA|G|800
8ZH3|1|LA|A|801
8ZH3|1|LA|C|802
*
8ZH3|1|LA|G|941
8ZH3|1|LA|U|942
8ZH3|1|LA|U|943
8ZH3|1|LA|C|944
*
8ZH3|1|LA|G|1375
8ZH3|1|LA|C|1376
*
8ZH3|1|LA|G|1431
8ZH3|1|LA|C|1432
8ZH3|1|LA|A|1433
8ZH3|1|LA|G|1434
8ZH3|1|LA|A|1435
8ZH3|1|LA|U|1436
8ZH3|1|LA|C|1437
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LN
- Large ribosomal subunit protein eL13A
- Chain LP
- Large ribosomal subunit protein eL15A
- Chain Lc
- Large ribosomal subunit protein uL15
- Chain Lg
- Large ribosomal subunit protein eL32
Coloring options: