J5_8ZH3_004

3D structure

PDB id

8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with A/P-P/E tRNA and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAAAAUAG*UG*UG*CGGACAAGG*CAC

Length

25 nucleotides

Bulged bases

8ZH3|1|LA|G|2116, 8ZH3|1|LA|G|2121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8ZH3_004 not in the Motif Atlas

Homologous match to J5_8CRE_004

Geometric discrepancy: 0.0679

The information below is about J5_8CRE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8ZH3|1|LA|G|1906
8ZH3|1|LA|C|1907
8ZH3|1|LA|A|1908
8ZH3|1|LA|A|1909
8ZH3|1|LA|A|1910
8ZH3|1|LA|A|1911
8ZH3|1|LA|U|1912
8ZH3|1|LA|A|1913
8ZH3|1|LA|G|1914
*
8ZH3|1|LA|U|1938
8ZH3|1|LA|G|1939
*
8ZH3|1|LA|U|2109
8ZH3|1|LA|G|2110
*
8ZH3|1|LA|C|2114
8ZH3|1|LA|G|2115
8ZH3|1|LA|G|2116
8ZH3|1|LA|A|2117
8ZH3|1|LA|C|2118
8ZH3|1|LA|A|2119
8ZH3|1|LA|A|2120
8ZH3|1|LA|G|2121
8ZH3|1|LA|G|2122
*
8ZH3|1|LA|C|2331
8ZH3|1|LA|A|2332
8ZH3|1|LA|C|2333

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LT

Large ribosomal subunit protein eL19A

Chain LX

Large ribosomal subunit protein uL14A

Chain LY

Large ribosomal subunit protein eL24A

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SV

Small ribosomal subunit protein eS8A