J5_8ZH3_005
3D structure
- PDB id
- 8ZH3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/P-P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 8ZH3|1|LA|A|2404, 8ZH3|1|LA|A|2817, 8ZH3|1|LA|U|2873, 8ZH3|1|LA|G|2874, 8ZH3|1|LA|U|2978, 8ZH3|1|LA|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZH3|1|LA|A|2399
8ZH3|1|LA|G|2400
8ZH3|1|LA|A|2401
8ZH3|1|LA|A|2402
8ZH3|1|LA|G|2403
8ZH3|1|LA|A|2404
8ZH3|1|LA|C|2405
8ZH3|1|LA|C|2406
*
8ZH3|1|LA|G|2815
8ZH3|1|LA|G|2816
8ZH3|1|LA|A|2817
8ZH3|1|LA|U|2818
8ZH3|1|LA|A|2819
8ZH3|1|LA|A|2820
8ZH3|1|LA|C|2821
8ZH3|1|LA|U|2822
8ZH3|1|LA|G|2823
*
8ZH3|1|LA|C|2867
8ZH3|1|LA|U|2868
8ZH3|1|LA|U|2869
8ZH3|1|LA|C|2870
8ZH3|1|LA|G|2871
8ZH3|1|LA|A|2872
8ZH3|1|LA|U|2873
8ZH3|1|LA|G|2874
8ZH3|1|LA|U|2875
8ZH3|1|LA|C|2876
*
8ZH3|1|LA|G|2951
8ZH3|1|LA|G|2952
8ZH3|1|LA|U|2953
8ZH3|1|LA|U|2954
8ZH3|1|LA|U|2955
8ZH3|1|LA|A|2956
8ZH3|1|LA|G|2957
*
8ZH3|1|LA|U|2975
8ZH3|1|LA|A|2976
8ZH3|1|LA|G|2977
8ZH3|1|LA|U|2978
8ZH3|1|LA|U|2979
8ZH3|1|LA|U|2980
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL2A
- Chain LE
- Large ribosomal subunit protein uL3
- Chain LF
- Large ribosomal subunit protein uL4A
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain Ld
- Large ribosomal subunit protein eL29
- Chain Ta
- Transfer RNA; tRNA
Coloring options: