J5_8ZHB_009
3D structure
- PDB id
- 8ZHB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A P/E tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 8ZHB|1|S2|A|93, 8ZHB|1|S2|C|424
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZHB|1|S2|C|54
8ZHB|1|S2|A|55
8ZHB|1|S2|U|56
8ZHB|1|S2|G|57
*
8ZHB|1|S2|C|90
8ZHB|1|S2|G|91
8ZHB|1|S2|A|92
8ZHB|1|S2|A|93
8ZHB|1|S2|U|94
8ZHB|1|S2|G|95
8ZHB|1|S2|G|96
8ZHB|1|S2|C|97
*
8ZHB|1|S2|G|386
8ZHB|1|S2|A|387
8ZHB|1|S2|G|388
*
8ZHB|1|S2|C|409
8ZHB|1|S2|A|410
8ZHB|1|S2|C|411
*
8ZHB|1|S2|G|422
8ZHB|1|S2|G|423
8ZHB|1|S2|C|424
8ZHB|1|S2|A|425
8ZHB|1|S2|G|426
Current chains
- Chain S2
- chain 2 18S rRNA (1799-MER)
Nearby chains
- Chain LX
- Large ribosomal subunit protein uL14A
- Chain SS
- Small ribosomal subunit protein eS4A
- Chain ST
- Small ribosomal subunit protein eS6A
- Chain SV
- Small ribosomal subunit protein eS8A
- Chain SW
- Small ribosomal subunit protein uS4A
- Chain Sd
- Small ribosomal subunit protein eS24A
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