J5_8ZHC_004

3D structure

PDB id

8ZHC (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GCAAAAUAG*UG*UG*CGGACAAGG*CAC

Length

25 nucleotides

Bulged bases

8ZHC|1|LA|U|1911, 8ZHC|1|LA|G|2115, 8ZHC|1|LA|G|2120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_8ZHC_004 not in the Motif Atlas

Homologous match to J5_8CRE_004

Geometric discrepancy: 0.2218

The information below is about J5_8CRE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8ZHC|1|LA|G|1905
8ZHC|1|LA|C|1906
8ZHC|1|LA|A|1907
8ZHC|1|LA|A|1908
8ZHC|1|LA|A|1909
8ZHC|1|LA|A|1910
8ZHC|1|LA|U|1911
8ZHC|1|LA|A|1912
8ZHC|1|LA|G|1913
*
8ZHC|1|LA|U|1937
8ZHC|1|LA|G|1938
*
8ZHC|1|LA|U|2108
8ZHC|1|LA|G|2109
*
8ZHC|1|LA|C|2113
8ZHC|1|LA|G|2114
8ZHC|1|LA|G|2115
8ZHC|1|LA|A|2116
8ZHC|1|LA|C|2117
8ZHC|1|LA|A|2118
8ZHC|1|LA|A|2119
8ZHC|1|LA|G|2120
8ZHC|1|LA|G|2121
*
8ZHC|1|LA|C|2330
8ZHC|1|LA|A|2331
8ZHC|1|LA|C|2332

Current chains

Chain LA

25S rRNA (3393-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein uL3

Chain LT

Large ribosomal subunit protein eL19A

Chain LX

Large ribosomal subunit protein uL14A

Chain LY

Large ribosomal subunit protein eL24A

Chain S2

Small subunit ribosomal RNA; SSU rRNA